FUNSEQ2_DC3 contains annotations from  PCAWG 2016.
The updated files include gencode.v19.cds.bed inside gencode_new.tar.gz folder
			  gencode.v19.promoter.bed inside gencode_new.tar.gz
			  drm.gene.new.bed 
			  new_ENCODE.gz (update ENCODE_annotation.gz files). This file contains updated lncRNA, miRNA, snRNA and enhancer regions.
All the remaining data context files are similar to FUNSEQ2_CD2